The Professors' Posts

Polymerase Chain reaction (PCR)

 

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SUSAN LECLAIR

To understand PCR results, you need to understand the actual procedure. DNA is taken from cells and "encouraged" to replicate (make copies of itself). Depending on the amount of time that it is given, you end end up with either 1,000,000 to 1,000,000,000 copies of the DNA. This increased number is then tested for the presence of a specific piece of DNA.
So - 1. This is extraordinarily sensitive. As a consequence, you might have only 1 cell in your entire body that is positive and it might show up here.
2. The test does not discriminate between live cells, damaged cells, or dead cells. So it is possible that the positive is a result of the dead cell's DNA or the cell that cannot multiply because the rest of the cell is so damaged or a cell to be concerned about.
3. As with all tests but especially highly sensitive ones, there is always the possibility of false positives. Exactly how trusting are you that your DNA can copy itself a billion times under stressed conditions (shortened time) with absolute perfection? And even if a mistake happens only once, it will result in a positive just as if the DNA was really there.
4. In remissions, the first signs are seen in the blood stream, followed by the bone marrow aspirate/biopsy, then by the cytospin in the fluids, then by chromosomal analysis, then FISH and finally PCR. So the last place to "become" negative will be the PCR . Commonly, the term "complete remission" refers to the absence of the disease in the blood and bone marrow. Chromosomal remission means nothing is found in the karyotype (if that is a possible test for that disease) or FISH. Genetic remission means that all tests, including the PCR, are negative.
 

SUSAN LECLAIR

Dear Joe, I took your " I think Susan said something" as a clue to restate the situation ;-)

The PCR technique starts with DNA - not with live cells and then every single strand of DNA is multiplied somewhere between 10,000 and 1,000,000 times. This increases the sensitivity of the test immensely. If the test is 90% positive, then there is no doubt that it is a "true" positive. But when you get down into the 1-5% positivity, you have to question the possibility of a false positivity. The false positives include

1. The piece of DNA may come from a cell which is actually dead and therefore will not be able to continue the disease process. 2. The piece of DNA may come from a cell which is still alive but so damaged that it will not be able to continue the disease process. 3. The positive is due to a mistake that actually occurred during the multiplication part of the test procedure.

Most folks now hedge their bets and call this "minimum residual disease".

SUSAN LECLAIR

Dennis, PCR does frequently oscillate between positive and negative. Part of this reason is the extremely high sensitivity of the procedure. It is so sensitive that even one almost dead or dead cell can be picked up. Another reason is that, because of the sensitivity, occasional false positive results are possible. And a third part of this is that we still do not fully (or even marginally) understand the concept of "minimum residual disease".
When you were first diagnosed, you probably had somewhere in the area of 100,000,000,000,000 malignant cells. We know what that is and we know the outcome of that large a tumor burden. Remission occurs around 1,000,000 cells. PCR remission is around 10,000 cells. We do know that most people have some malignant cells in them every day. If you have 1 cell, is that cancer? Not as we have always known it, it isn't. So what do we say about a person who has 10 bad cells - so far we know that their quality of life is excellent. - we know that they appear to be no t at risk for anything troublesome - we know that all other functions appear to be within reference range
We believe them to be cancer survivors - who just need to take care of themselves. But we cannot predict the future.
 

TERRY HAMBLIN

17 April 2005

Remission is a term used in acute leukemia. It means that there is no detectable disease in the body. 'Detectable' is a variable feast. It depends on how good a detective you are. The standard way of looking is with a microscope. If you can't see any leukemic cells then you are said to be in complete remission. But leukemic cells cannot be separated from their normal counterparts simply by looking down a microscope and there may be 1,000,000,000 leukemic cells left in the body. There are more sensitive techniques such as PCR for looking fro 'minimal residual disease'. Even they can miss very small numbers of cells (less than 100,000 leukemic cells).

It is hard to get your head round these numbers. In a teaspoonful of blood there are 25,000,000,000 red blood cells. Another way of looking at it is to remember that we make 3 million new blood cells every second. Another way is to remember that only 10% of the cells in your body are human.

The term remission has therefore spread from acute leukemia to other conditions including CLL. What it means is that we cannot detect any disease, but we don't know whether we got it all. If we haven't then it will come back, but only time will tell.

In the film "Battle of Britain" Laurence Olivier (playing Field Marshall Lord Dowding) is asked whether the number of 'kills' of German aircraft has been exaggerated as the German High Command had claimed. Olivier replies with disdain something like, "If we are right we will win; if they are right we will lose." Time will tell.

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